PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1257s0090.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 558aa    MW: 63257.4 Da    PI: 7.3898
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1257s0090.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.9e-2344145199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +g++v
  SapurV1A.1257s0090.3.p  44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHEVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGESV 128
                             99*****************************86555544..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  SapurV1A.1257s0090.3.p 129 LFI--WNEKNQLLLGIRRA 145
                             ***..8899999****997 PP

2Auxin_resp120.51.3e-39170253183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  SapurV1A.1257s0090.3.p 170 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhIRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 253
                             79*******************************98659*******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-4828173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-4037159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-2043144No hitNo description
PfamPF023624.8E-2144145IPR003340B3 DNA binding domain
SMARTSM010192.7E-2344146IPR003340B3 DNA binding domain
PROSITE profilePS5086311.81544146IPR003340B3 DNA binding domain
PfamPF065071.1E-34170253IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLT PQEQKETFLP MDLGMPSKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFTQQPP AQELIARDLH EVEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGESVLF IWNEKNQLLL GIRRATRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF  180
TVFYNPRASP SEFVIPLSKY VKAVFHIRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD  240
PVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHPGSSS  300
FLDSRDEASN GLIWLKDGSG EQGLPSLNFQ ANMLPWMQQR LDPTMLGNDH TQRYQAILAA  360
GMQKLGGGDP LRQQFMQLQQ PFQYLQQSSS PNPLLQLQQQ HQAIQQSISH NILQPQNQIS  420
TDSLPRHLLQ QQLNNQPNDQ PQQHQHAYHD GLHIQTDQLQ RQQSNLPSPS FSKTEYMESS  480
PKFTVSTTMQ NMLGSVCTEG SGNLLDFTRA SQSTLTEQLP QQSWVPKYAH QEVNAFSNSL  540
SHPRTYPEKD PSMEAEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1261274115388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479150.0EF147915.1 Populus trichocarpa clone WS0125_O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038345.10.0PREDICTED: auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLU5FJ270.0U5FJ27_POPTR; Auxin response factor
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8